6RNY
PFV intasome - nucleosome strand transfer complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8070527 | 3001387 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Core histone-like | 8070527 | 3001387 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Core histone-like | 8067130 | 3001387 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Core histone-like | 8067130 | 3001387 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00125 | e6rnyA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E | PF00125 | e6rnyE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
B | PF15511 | e6rnyB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
F | PF15511 | e6rnyF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
C | PF00125,PF16211 | e6rnyC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
G | PF00125,PF16211 | e6rnyG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
D | PF00125 | e6rnyD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H | PF00125 | e6rnyH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
I [auth K] | PF18103 | e6rnyK3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18103 | ECOD (1.6) |
I [auth K] | PF17921 | e6rnyK2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF17921 | ECOD (1.6) |
I [auth K] | PF00665 | e6rnyK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
J [auth L] | PF00665 | e6rnyL1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
K [auth O] | PF18103 | e6rnyO3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18103 | ECOD (1.6) |
K [auth O] | PF17921 | e6rnyO2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF17921 | ECOD (1.6) |
K [auth O] | PF00665 | e6rnyO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
L [auth P] | PF00665 | e6rnyP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
I [auth K], J [auth L], K [auth O], L [auth P] | PF18103 | Retroviral integrase C-terminal SH3 domain (SH3_11) | Retroviral integrase C-terminal SH3 domain | This is the carboxy-terminal domain (CTD) found in retroviral integrase, an essential retroviral enzyme that binds both termini of linear viral DNA and inserts them into a host cell chromosome. The CTD adopts an SH3-like fold. Each CTD makes contact ... | Domain |
I [auth K], J [auth L], K [auth O], L [auth P] | PF17921 | Integrase zinc binding domain (Integrase_H2C2) | Integrase zinc binding domain | This zinc binding domain is found in a wide variety of integrase proteins. | Domain |
I [auth K], J [auth L], K [auth O], L [auth P] | PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain |