6NSF

Crystal structure of the A/Brisbane/10/2007 (H3N2) influenza virus hemagglutinin G186V/L194P mutant in complex with 3'-SLNLN


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6AOQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M CAPS pH 10.5 and 29% PEG 400
Crystal Properties
Matthews coefficientSolvent content
3.3162.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.174α = 90
b = 100.174β = 90
c = 382.752γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-01-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.9795SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1501000.130.03120.619.24448029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.181000.950.210.892.719.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6AOQ2.15041587218599.920.183550.182010.21361RANDOM51.457
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.930.460.93-3.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.652
r_dihedral_angle_4_deg16.559
r_dihedral_angle_3_deg15.097
r_long_range_B_refined6.782
r_long_range_B_other6.782
r_dihedral_angle_1_deg6.285
r_scangle_other2.867
r_scbond_it1.611
r_scbond_other1.611
r_mcangle_it1.588
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.652
r_dihedral_angle_4_deg16.559
r_dihedral_angle_3_deg15.097
r_long_range_B_refined6.782
r_long_range_B_other6.782
r_dihedral_angle_1_deg6.285
r_scangle_other2.867
r_scbond_it1.611
r_scbond_other1.611
r_mcangle_it1.588
r_mcangle_other1.588
r_angle_refined_deg1.481
r_angle_other_deg0.94
r_mcbond_other0.907
r_mcbond_it0.906
r_chiral_restr0.081
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3869
Nucleic Acid Atoms
Solvent Atoms368
Heterogen Atoms229

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction