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Crystal structure of the A/Brisbane/10/2007 (H3N2) influenza virus hemagglutinin G186V/L194P mutant in complex with 3'-SLNLN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6AOQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M CAPS pH 10.5 and 29% PEG 400
Crystal Properties Matthews coefficient Solvent content 3.31 62.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.174 α = 90 b = 100.174 β = 90 c = 382.752 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 100 0.13 0.03 1 20.6 19.2 44480 29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 100 0.95 0.21 0.89 2.7 19.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6AOQ 2.1 50 41587 2185 99.92 0.18355 0.18201 0.1894 0.21361 0.2198 RANDOM 51.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.46 0.93 -3.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.652 r_dihedral_angle_4_deg 16.559 r_dihedral_angle_3_deg 15.097 r_long_range_B_refined 6.782 r_long_range_B_other 6.782 r_dihedral_angle_1_deg 6.285 r_scangle_other 2.867 r_scbond_it 1.611 r_scbond_other 1.611 r_mcangle_it 1.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.652 r_dihedral_angle_4_deg 16.559 r_dihedral_angle_3_deg 15.097 r_long_range_B_refined 6.782 r_long_range_B_other 6.782 r_dihedral_angle_1_deg 6.285 r_scangle_other 2.867 r_scbond_it 1.611 r_scbond_other 1.611 r_mcangle_it 1.588 r_mcangle_other 1.588 r_angle_refined_deg 1.481 r_angle_other_deg 0.94 r_mcbond_other 0.907 r_mcbond_it 0.906 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3869 Nucleic Acid Atoms Solvent Atoms 368 Heterogen Atoms 229
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHASER phasing HKL-2000 data reduction