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Crystal straucture of Uso1-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W3C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M Tris-HCl pH 7.0, 0.2 M MgCl2, 2.5 M NaCl
Crystal Properties Matthews coefficient Solvent content 4.39 71.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.368 α = 90 b = 114.368 β = 90 c = 193.443 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 1.0 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.94 50 98.7 0.088 0.094 0.031 13.7 8.9 31647
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.94 2.99 97.9 0.896 0.948 0.304 0.89 8.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2W3C 2.94 49.22 29043 1550 96.23 0.1948 0.1919 0.2516 0.2359 RANDOM 72.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.865 r_dihedral_angle_4_deg 23.336 r_dihedral_angle_3_deg 21.135 r_dihedral_angle_1_deg 7.792 r_angle_refined_deg 1.972 r_angle_other_deg 1.44 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.865 r_dihedral_angle_4_deg 23.336 r_dihedral_angle_3_deg 21.135 r_dihedral_angle_1_deg 7.792 r_angle_refined_deg 1.972 r_angle_other_deg 1.44 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5222 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction REFMAC phasing