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crystal structure of alpha-momorcharin in complex with adenine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F8Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.2 M Magnesium Acetate, 20% PEG 8000, 0.1 M Sodium cacodylate, pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.95 36.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.167 α = 90 b = 131.167 β = 90 c = 37.145 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 50 93.9 0.084 0.989 11 3.4 96174
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.12 0.72 0.649 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1F8Q 1.08 24.038 96174 4939 93.841 0.203 0.2024 0.2058 0.2215 0.2261 16.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.259 -0.129 -0.259 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.883 r_dihedral_angle_4_deg 20.448 r_dihedral_angle_3_deg 12.278 r_dihedral_angle_1_deg 5.875 r_lrange_it 3.808 r_lrange_other 3.581 r_scangle_it 2.458 r_scangle_other 2.457 r_angle_refined_deg 1.743 r_scbond_it 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.883 r_dihedral_angle_4_deg 20.448 r_dihedral_angle_3_deg 12.278 r_dihedral_angle_1_deg 5.875 r_lrange_it 3.808 r_lrange_other 3.581 r_scangle_it 2.458 r_scangle_other 2.457 r_angle_refined_deg 1.743 r_scbond_it 1.61 r_scbond_other 1.609 r_angle_other_deg 1.575 r_mcangle_it 1.363 r_mcangle_other 1.363 r_mcbond_it 0.903 r_mcbond_other 0.899 r_symmetry_nbd_refined 0.245 r_nbd_refined 0.219 r_nbd_other 0.185 r_nbtor_refined 0.179 r_symmetry_nbd_other 0.172 r_xyhbond_nbd_refined 0.124 r_symmetry_xyhbond_nbd_refined 0.105 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1924 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing