6LOZ

crystal structure of alpha-momorcharin in complex with adenine


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1F8Q 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52980.2 M Magnesium Acetate, 20% PEG 8000, 0.1 M Sodium cacodylate, pH 6.5
Crystal Properties
Matthews coefficientSolvent content
1.9536.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 131.167α = 90
b = 131.167β = 90
c = 37.145γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2007-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.085093.90.0840.989113.496174
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.081.120.720.6492

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1F8Q1.0824.03896174493993.8410.2030.20240.221516.437
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.259-0.129-0.2590.84
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.883
r_dihedral_angle_4_deg20.448
r_dihedral_angle_3_deg12.278
r_dihedral_angle_1_deg5.875
r_lrange_it3.808
r_lrange_other3.581
r_scangle_it2.458
r_scangle_other2.457
r_angle_refined_deg1.743
r_scbond_it1.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.883
r_dihedral_angle_4_deg20.448
r_dihedral_angle_3_deg12.278
r_dihedral_angle_1_deg5.875
r_lrange_it3.808
r_lrange_other3.581
r_scangle_it2.458
r_scangle_other2.457
r_angle_refined_deg1.743
r_scbond_it1.61
r_scbond_other1.609
r_angle_other_deg1.575
r_mcangle_it1.363
r_mcangle_other1.363
r_mcbond_it0.903
r_mcbond_other0.899
r_symmetry_nbd_refined0.245
r_nbd_refined0.219
r_nbd_other0.185
r_nbtor_refined0.179
r_symmetry_nbd_other0.172
r_xyhbond_nbd_refined0.124
r_symmetry_xyhbond_nbd_refined0.105
r_chiral_restr0.09
r_symmetry_nbtor_other0.082
r_bond_refined_d0.012
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1924
Nucleic Acid Atoms
Solvent Atoms276
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing