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Human cathepsin-C in complex with dipeptidyl cyclopropyl nitrile inhibitor 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 20.0 % (w/v) PEG 3000
0.1 M sodium citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.81 56.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.975 α = 90 b = 88.329 β = 90 c = 115.183 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2010-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER X8 PROTEUM 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 27.9 94 0.06 29.8 11.9 29396
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 61.2 0.212 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 27.505 28534 1429 93.97 0.154 0.1519 0.1983 0.1915 17.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.053 0.146 -0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.526 r_dihedral_angle_4_deg 23.52 r_dihedral_angle_3_deg 14.701 r_dihedral_angle_1_deg 7.914 r_lrange_other 5.719 r_lrange_it 5.718 r_scangle_it 2.069 r_scangle_other 2.069 r_angle_refined_deg 1.838 r_mcangle_it 1.737
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.526 r_dihedral_angle_4_deg 23.52 r_dihedral_angle_3_deg 14.701 r_dihedral_angle_1_deg 7.914 r_lrange_other 5.719 r_lrange_it 5.718 r_scangle_it 2.069 r_scangle_other 2.069 r_angle_refined_deg 1.838 r_mcangle_it 1.737 r_mcangle_other 1.737 r_angle_other_deg 1.451 r_scbond_it 1.248 r_scbond_other 1.248 r_mcbond_it 1.031 r_mcbond_other 1.031 r_symmetry_xyhbond_nbd_refined 0.312 r_symmetry_nbd_refined 0.234 r_nbd_other 0.216 r_xyhbond_nbd_refined 0.209 r_nbd_refined 0.208 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.183 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_symmetry_xyhbond_nbd_other 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2759 Nucleic Acid Atoms Solvent Atoms 372 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement PROTEUM2 data reduction SCALA data scaling REFMAC phasing