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AB21 protein from Agaricus bisporus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 290 20 mM MES, 150 mM NaCl, pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.47 50.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.936 α = 90 b = 73.936 β = 90 c = 70.592 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 36.96 99.9 0.043 0.999 40.6 11.5 7689 20.53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.07 0.998 26.7 12
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 36.96 7274 383 99.87 0.24723 0.24346 0.2492 0.31719 0.3264 RANDOM 29.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.57 -0.79 -1.57 5.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.922 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 16.162 r_dihedral_angle_1_deg 5.529 r_long_range_B_refined 4.2 r_long_range_B_other 4.199 r_mcangle_it 2.262 r_mcangle_other 2.261 r_scangle_other 1.874 r_mcbond_it 1.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.922 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 16.162 r_dihedral_angle_1_deg 5.529 r_long_range_B_refined 4.2 r_long_range_B_other 4.199 r_mcangle_it 2.262 r_mcangle_other 2.261 r_scangle_other 1.874 r_mcbond_it 1.297 r_mcbond_other 1.293 r_angle_refined_deg 1.253 r_scbond_it 1.053 r_scbond_other 1.052 r_angle_other_deg 0.919 r_chiral_restr 0.058 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1422 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing