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Mono- and bivalent 14-3-3 inhibitors for characterizing supramolecular lysine-PEG interactions in proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NKX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 0.18 M Magnesium chloride
0.09 M Sodium HEPES pH 7.5
10% (v/v) Glycerol
27% (v/v) Isopropanol
Crystal Properties Matthews coefficient Solvent content 4 69.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.035 α = 90 b = 102.888 β = 90 c = 113.627 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.978 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 46.86 99.8 0.096 0.1 0.998 16.05 13.254 48277 51.04
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.25 98.9 0.822 0.855 0.884 2.92 13.246
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3NKX 2.12 46.86 45800 2411 99.81 0.2035 0.2018 0.2078 0.2357 0.2381 RANDOM 48.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 2.55 -2.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.639 r_dihedral_angle_4_deg 19.144 r_dihedral_angle_3_deg 14.32 r_dihedral_angle_1_deg 5.058 r_angle_refined_deg 1.048 r_angle_other_deg 0.995 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_bond_other_d 0.004 r_gen_planes_refined 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.639 r_dihedral_angle_4_deg 19.144 r_dihedral_angle_3_deg 14.32 r_dihedral_angle_1_deg 5.058 r_angle_refined_deg 1.048 r_angle_other_deg 0.995 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_bond_other_d 0.004 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3543 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 118
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction