6D74
Direct Activation of the Executioner Domain of MLKL by a Select Repertoire of Inositol Phosphates
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE II 600 |
2 | 3D 1H-15N NOESY | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE III 800 |
3 | 3D 1H-13C NOESY aliphatic | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE III 800 |
4 | 3D 1H-13C NOESY aromatic | 500 uM [U-13C; U-15N] protein | 90% H2O/10% D2O | 0 mM | 6.8 | 1 atm | 303 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA | |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | chemical shift assignment | CARA | 1.9 | Keller and Wuthrich |
3 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
4 | peak picking | CARA | 1.9 | Keller and Wuthrich |
5 | collection | TopSpin | 3.5 | Bruker Biospin |
6 | refinement | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
7 | geometry optimization | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |