☰ Navigation Tabs
Solution NMR structures of BRD4 ET domain with JMJD6 peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 600 2 3D HNCACB 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 600 3 3D CBCA(CO)NH 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 600 4 3D 1H-15N NOESY 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 800 5 3D 1H-13C NOESY aliphatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 900 6 3D 1H-13C NOESY aromatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 900 7 3D filtered 1H-13C NOESY aliphatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 900 8 3D filtered 1H-13C NOESY aromatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 800 3 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement ARIA 2.3 Linge, O'Donoghue and Nilges 2 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 peak picking NMRView Johnson, One Moon Scientific 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 data analysis ProcheckNMR Laskowski and MacArthur 7 collection TopSpin Bruker Biospin