Experiment: 6ZOM

Oxidized thioredoxin 1 from the anaerobic bacteria Desulfovibrio vulgaris Hildenborough

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
2	2D 1H-13C HSQC	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
3	2D 1H-1H TOCSY	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
4	2D 1H-1H NOESY	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
5	3D CBCA(CO)NH	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
6	3D HNCO	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
7	3D HNCACB	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
8	3D HCCH-TOCSY	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
10	3D 1H-15N NOESY	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
9	3D HNCA	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
13	3D HNHA	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
12	3D HBHA(CO)NH	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
11	3D HN(CO)CA	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600
14	3D 1H-13C NOESY	1.0 mM [U-99% 13C; U-99% 15N] Thioredoxin 1	90% H2O/10% D2O	100 mM	5.5	1 atm	290	Bruker AVANCE DRX 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE DRX	600

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CARA		Keller and Wuthrich
5	chemical shift calculation	TALOS		Cornilescu, Delaglio and Bax
2	processing	TopSpin		Bruker Biospin
6	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
7	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3	chemical shift assignment	CARA		Keller and Wuthrich
4	peak picking	CARA		Keller and Wuthrich