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Crystal structure of MreC from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 protein 10-11 mg/ml, 20 mM HEPES pH 8, 200 mM NaCl. reservoir 100 mM imidazole pH 6.5, 1.5 M NaCl, 15 % w/v PEG 3350, 100 mM MgCl2. Cryoprotection Parabar 10312 (Hampton Research)
Crystal Properties Matthews coefficient Solvent content 2.29 46.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49 α = 90 b = 49 β = 90 c = 116.241 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 PIXEL DECTRIS PILATUS 2M 2019-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.45883 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 42.44 96.1 0.041 0.042 1 25.9 16 27246 38.28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.56 76.1 0.297 0.317 0.292 0.56 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.471 42.435 27246 2036 96.262 0.219 0.2168 0.2212 0.2445 0.2447 39.496
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.658 0.329 0.658 -2.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.244 r_dihedral_angle_4_deg 19.598 r_dihedral_angle_3_deg 12.028 r_dihedral_angle_1_deg 6.701 r_lrange_it 5.885 r_lrange_other 5.87 r_scangle_it 2.838 r_scangle_other 2.837 r_scbond_it 1.885 r_scbond_other 1.883
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.244 r_dihedral_angle_4_deg 19.598 r_dihedral_angle_3_deg 12.028 r_dihedral_angle_1_deg 6.701 r_lrange_it 5.885 r_lrange_other 5.87 r_scangle_it 2.838 r_scangle_other 2.837 r_scbond_it 1.885 r_scbond_other 1.883 r_mcangle_it 1.766 r_mcangle_other 1.765 r_mcbond_it 1.351 r_mcbond_other 1.349 r_angle_refined_deg 1.332 r_angle_other_deg 1.292 r_nbd_other 0.236 r_symmetry_nbd_refined 0.22 r_nbd_refined 0.214 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.155 r_symmetry_xyhbond_nbd_other 0.148 r_xyhbond_nbd_refined 0.143 r_symmetry_xyhbond_nbd_refined 0.134 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1178 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Arcimboldo phasing