6ZL2

Structure of a parallel c-Myc modified with 3' duplex stem-loop overhang


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC aromatic0.5 mM 0 Nucleic acid90% H2O/10% D2O10 mM7.01 atm293Bruker AVANCE NEO 600
22D 1H-1H NOESY0.5 mM 0 Nucleic acid90% H2O/10% D2O10 mM7.01 atm293Bruker AVANCE NEO 600
32D DQF-COSY0.5 mM 0 Nucleic acid90% H2O/10% D2O10 mM7.01 atm293Bruker AVANCE NEO 600
42D DQF-COSY0.5 mM 0 Nucleic acid100% D2O10 mM7.01 atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number13
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCcpNmr Analysis2.4.2G.W. Vuister, R.H. Fogh
2structure calculationX-PLOR NIH2.52Schwieters, Kuszewski, Tjandra and Clore
3data analysisCcpNmr Analysis2.4.2G.W. Vuister, R.H. Fogh
4peak pickingCcpNmr Analysis2.4.2G.W. Vuister, R.H. Fogh
5refinementAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman