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bovine ATP synthase Stator domain, state 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V7Q experimental model PDB 2CLY experimental model PDB 2WSS
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.5836 f_angle_d 0.7183 f_chiral_restr 0.042 f_plane_restr 0.0055 f_bond_d 0.0053
Sample bovine dimeric ATP synthase Sample Components ATP synthase stator domain, state 2 ATP synthase peripheral stalk
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were ... The sample was allowed to penetrate through the holey support and to distribute to both sides of the grid surface for ca. 15 sec. Then the grids were blotted with filter paper for 8-10 sec before blotting.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 90850 Reported Resolution (Å) 3.49 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (2V7Q, 2V7Q, 2V7Q, 2V7Q, 2V7Q, 2V7Q, 2V7Q, 2V7Q, 2V7Q, 2V7Q, 2CLY, 2CLY, 2CLY, 2WSS) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 4.6
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION RELION 3.1 CTF CORRECTION CTFFIND 4.1 MODEL FITTING Coot FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1 MODEL REFINEMENT PHENIX 1.17 MODEL REFINEMENT PHENIX 1.18
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION