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NMR structural analysis of yeast Cox13 reveals its C-terminus in interaction with ATP
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N TROSY HSQC 0.5 mM [U-15N] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900 2 3D backbone experiments 0.5 mM [U-13C; U-15N] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900 3 3D sidechain experiments 0.5 mM [U-13C; U-15N] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900 4 3D 15N-NOESY 0.5 mM [U-13C; U-15N] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900 5 3D 13C-NOESY 0.5 mM [U-13C; U-15N] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900 6 3D 15N-filtered/edited-NOESY 0.5 mM 50%[15N, 13C] mixed with 50% [14N, 12C] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900 7 3D 13C-filtered/edited-NOESY 0.5 mM 50%[15N, 13C] mixed with 50% [14N, 12C] Cytochrome c oxidase subunit 13, Cox13 90% H2O/10% D2O 20 mM 6.5 1 atm 313.15 Bruker AVANCE 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 15 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 data analysis CcpNmr Analysis CCPN 3 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read