☰ Navigation Tabs
Apo Structure of a Hydrolase from Pseudomonas aeruginosa PAO1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 12 mg/mL of PaSpo2 protein stock in the buffer of 25 mM Tris pH 8.0, 200 mM NaCl, and 10 mM MgCl2 is mixed 1:1 ratio with the precipitant consisted of 4.0 M NH4OAc, 0.1 M Bis-Tris propane, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.74 55.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.31 α = 90 b = 85.9 β = 102.34 c = 122.64 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 59.9 81.3 0.999 23.2 5.9 95945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.61 0.573
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.58 59.9 95945 4868 81.169 0.141 0.1374 0.1398 0.2004 0.2013 33.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -1.978 2.023 -0.764
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.559 r_dihedral_angle_4_deg 20.675 r_dihedral_angle_3_deg 14.962 r_scangle_other 8.996 r_scangle_it 8.995 r_lrange_it 8.442 r_lrange_other 8.348 r_scbond_it 7.615 r_scbond_other 7.615 r_mcangle_it 6.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.559 r_dihedral_angle_4_deg 20.675 r_dihedral_angle_3_deg 14.962 r_scangle_other 8.996 r_scangle_it 8.995 r_lrange_it 8.442 r_lrange_other 8.348 r_scbond_it 7.615 r_scbond_other 7.615 r_mcangle_it 6.858 r_mcangle_other 6.857 r_dihedral_angle_1_deg 6.392 r_mcbond_it 5.961 r_mcbond_other 5.961 r_rigid_bond_restr 3.864 r_angle_refined_deg 1.676 r_angle_other_deg 1.513 r_nbd_refined 0.223 r_nbd_other 0.197 r_symmetry_nbd_other 0.181 r_nbtor_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.166 r_symmetry_nbd_refined 0.154 r_xyhbond_nbd_refined 0.151 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.084 r_symmetry_xyhbond_nbd_other 0.058 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5632 Nucleic Acid Atoms Solvent Atoms 566 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling CRANK2 phasing