☰ Navigation Tabs
Carborane nido-hexyl-sulfonamide in complex with CA II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MDG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.08 40.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.15 α = 90 b = 41.34 β = 104.44 c = 72.35 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.09 35.6 92.4 0.051 0.06 0.999 10.93 3.841 93252 15.822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.09 1.16 79 0.931 1.084 0.53 1.18 3.731
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4MDG 1.1 35.6 89695 1831 93.38 0.1435 0.1431 0.1451 0.1656 0.1674 RANDOM 17.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.21 -0.09 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.932 r_dihedral_angle_4_deg 26.052 r_sphericity_free 16.992 r_dihedral_angle_3_deg 10.905 r_sphericity_bonded 9.042 r_dihedral_angle_1_deg 6.663 r_rigid_bond_restr 4.542 r_angle_refined_deg 1.635 r_angle_other_deg 1.537 r_chiral_restr 0.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.932 r_dihedral_angle_4_deg 26.052 r_sphericity_free 16.992 r_dihedral_angle_3_deg 10.905 r_sphericity_bonded 9.042 r_dihedral_angle_1_deg 6.663 r_rigid_bond_restr 4.542 r_angle_refined_deg 1.635 r_angle_other_deg 1.537 r_chiral_restr 0.111 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2035 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction FFT phasing