☰ Navigation Tabs
Carborane nido-pentyl-sulfonamide in complex with CA II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MDG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.08 40.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.258 α = 90 b = 41.385 β = 104.31 c = 71.838 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 39.86 93.9 0.029 0.036 0.999 14.84 2.466 122054 12.878
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.06 78.1 0.449 0.595 0.696 1.56 1.823
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4MDG 1 39.86 121249 1287 94.32 0.1262 0.1261 0.1279 0.1402 0.1423 RANDOM 15.196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.27 -0.24 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.046 r_sphericity_free 24.149 r_dihedral_angle_4_deg 22.261 r_dihedral_angle_3_deg 11.006 r_sphericity_bonded 10.555 r_rigid_bond_restr 7.108 r_dihedral_angle_1_deg 6.87 r_angle_other_deg 5.084 r_angle_refined_deg 1.665 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.046 r_sphericity_free 24.149 r_dihedral_angle_4_deg 22.261 r_dihedral_angle_3_deg 11.006 r_sphericity_bonded 10.555 r_rigid_bond_restr 7.108 r_dihedral_angle_1_deg 6.87 r_angle_other_deg 5.084 r_angle_refined_deg 1.665 r_chiral_restr 0.106 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2033 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 61
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction FFT phasing