☰ Navigation Tabs
Crystal structure of S. aureus FabI inhibited by SKTS1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BNH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1 M Na/K-PO4, pH 6.5, 35 % MPD
Crystal Properties Matthews coefficient Solvent content 2.93 57.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.349 α = 98.47 b = 94.56 β = 111.71 c = 94.781 γ = 97.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.976251 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 49.55 91.6 0.138 0.994 4.7 3.7 185831
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 1.99 93.2 0.345 0.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4BNH 1.96 49.55 176747 9068 91.63 0.23118 0.22972 0.236 0.25956 0.2639 RANDOM 39.379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.34 0.31 -0.61 -0.42 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.164 r_dihedral_angle_4_deg 16.9 r_dihedral_angle_3_deg 14.698 r_dihedral_angle_1_deg 6.646 r_long_range_B_refined 5.264 r_long_range_B_other 5.24 r_scangle_other 2.388 r_mcangle_it 1.949 r_mcangle_other 1.949 r_angle_refined_deg 1.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.164 r_dihedral_angle_4_deg 16.9 r_dihedral_angle_3_deg 14.698 r_dihedral_angle_1_deg 6.646 r_long_range_B_refined 5.264 r_long_range_B_other 5.24 r_scangle_other 2.388 r_mcangle_it 1.949 r_mcangle_other 1.949 r_angle_refined_deg 1.822 r_scbond_it 1.491 r_scbond_other 1.491 r_mcbond_it 1.217 r_mcbond_other 1.217 r_angle_other_deg 0.571 r_chiral_restr 0.074 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15721 Nucleic Acid Atoms Solvent Atoms 806 Heterogen Atoms 608
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing Coot model building