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Fragment of nitrate/nitrite sensor histidine kinase NarQ (R50S variant)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5IJI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 295 1.2 M KH2PO4/Na2HPO4 pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.36 47.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.933 α = 90 b = 73.702 β = 90 c = 236.166 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9724 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 44.7 87.1 0.998 10.1 4.6 6860
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.595 56.8 0.843 3.2 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5iji 2.4 44.7 6383 337 66.01 0.2885 0.2846 0.2878 0.3674 0.3757 RANDOM 38.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 0.27 -1.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.591 r_dihedral_angle_4_deg 15.312 r_dihedral_angle_3_deg 12.602 r_dihedral_angle_1_deg 2.952 r_angle_refined_deg 0.58 r_angle_other_deg 0.487 r_chiral_restr 0.033 r_bond_refined_d 0.003 r_gen_planes_refined 0.002 r_bond_other_d
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.591 r_dihedral_angle_4_deg 15.312 r_dihedral_angle_3_deg 12.602 r_dihedral_angle_1_deg 2.952 r_angle_refined_deg 0.58 r_angle_other_deg 0.487 r_chiral_restr 0.033 r_bond_refined_d 0.003 r_gen_planes_refined 0.002 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1778 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling MOLREP phasing