☰ Navigation Tabs
CLK1 bound with beta-carboline KH-CARB13 (Cpd 3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z57
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 17% PEG 6k, 0.1M bicine
Crystal Properties Matthews coefficient Solvent content 2.54 51.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.928 α = 90 b = 64.17 β = 123.41 c = 80.809 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2018-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 67.46 100 0.077 0.084 0.033 0.998 12.8 6.3 29054
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 100 0.413 0.454 0.185 0.909 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1z57 1.95 67.46 27146 1425 98.34 0.2066 0.2037 0.2109 0.2609 0.2657 RANDOM 27.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 -0.27 0.36 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.777 r_dihedral_angle_4_deg 19.894 r_dihedral_angle_3_deg 15.016 r_dihedral_angle_1_deg 6.715 r_angle_refined_deg 1.737 r_angle_other_deg 1.405 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.777 r_dihedral_angle_4_deg 19.894 r_dihedral_angle_3_deg 15.016 r_dihedral_angle_1_deg 6.715 r_angle_refined_deg 1.737 r_angle_other_deg 1.405 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2677 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 48
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing