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BRD9 with methylpiperazinyl-benzyl-amino-dimethylpyridazinone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.03M NaF, 0.03M NaI, 0.03M NaBr, 0.10M morpheus buffer 3 (1M pH 8.5), 37.5% morpheus MPD_P1K_3350
Crystal Properties Matthews coefficient Solvent content 2.39 48.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.589 α = 70.26 b = 33.867 β = 76.31 c = 39.523 γ = 72.9
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2012-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 36.77 91.3 0.017 40.2 2.2 11735
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.77 84.3 0.032 20.6 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.683 28.015 11682 573 90.882 0.158 0.1556 0.1691 0.2007 0.2122 19.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.461 -0.352 0.294 0.258 -0.557 -0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.643 r_dihedral_angle_3_deg 11.418 r_dihedral_angle_4_deg 10.317 r_lrange_it 6.422 r_lrange_other 6.419 r_dihedral_angle_1_deg 4.151 r_scangle_it 3.555 r_scangle_other 3.553 r_mcangle_it 2.508 r_mcangle_other 2.506
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.643 r_dihedral_angle_3_deg 11.418 r_dihedral_angle_4_deg 10.317 r_lrange_it 6.422 r_lrange_other 6.419 r_dihedral_angle_1_deg 4.151 r_scangle_it 3.555 r_scangle_other 3.553 r_mcangle_it 2.508 r_mcangle_other 2.506 r_scbond_it 2.23 r_scbond_other 2.228 r_mcbond_it 1.591 r_mcbond_other 1.585 r_angle_other_deg 1.302 r_angle_refined_deg 1.221 r_symmetry_xyhbond_nbd_refined 0.246 r_nbd_refined 0.199 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.175 r_nbd_other 0.17 r_xyhbond_nbd_refined 0.161 r_symmetry_nbd_refined 0.148 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 821 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling