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Rabbit muscle actin in complex with ADF-H and ATP-ATTO-488
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DAW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.1 M sodium cacodylate (pH 6.0) and 15% (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.21 38.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.552 α = 90 b = 69.017 β = 90 c = 147.948 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.564 62.546 99.8 0.146 0.161 0.065 0.996 10.3 6 17247 38.87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.564 2.608 100 0.885 0.969 0.39 0.701 2.3 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3DAW 2.564 62.55 17247 867 99.8 0.1767 0.1739 0.2299 0.2066 RANDOM 41.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.886 -5.3291 -4.557
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.51 t_omega_torsion 3.1 t_angle_deg 0.98 t_bond_d 0.008 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3983 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 32
Software Software Software Name Purpose BUSTER refinement XDS data reduction Aimless data scaling PHASER phasing autoPROC data reduction