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mEos4b - Directionality of Optical Properties of Fluorescent Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3S05
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 PEG 6000, tri-sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.12 42.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.51 α = 90 b = 70.51 β = 90 c = 90.6 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2019-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.541870
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 35.44 89 0.065 0.076 0.997 9.15 2.456 61581 20.974
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 33.9 0.324 0.455 0.749 0.98 1.226
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3s05 1.55 35.44 33203 1027 93.45 0.1866 0.1857 0.2004 0.214 0.2244 RANDOM 21.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 0.58 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.121 r_dihedral_angle_4_deg 19.394 r_dihedral_angle_3_deg 12.913 r_dihedral_angle_1_deg 7.854 r_angle_refined_deg 1.765 r_angle_other_deg 1.088 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.121 r_dihedral_angle_4_deg 19.394 r_dihedral_angle_3_deg 12.913 r_dihedral_angle_1_deg 7.854 r_angle_refined_deg 1.765 r_angle_other_deg 1.088 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1755 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 2
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing