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Translation initiation factor 4E in complex with bn7GpppG mRNA 5' cap analog
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L8B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9 291 0.1 M Bis-Tris propane pH 9.0, 0.1 M NaCl, 25 % w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.11 41.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.047 α = 90 b = 94.047 β = 90 c = 42.446 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.195 42.06 99.42 0.1473 0.1596 0.06037 0.995 11.01 7 19244 37.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.195 2.274 96.92 0.8653 0.9346 0.3486 0.805 1.99 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1L8B 2.1954544917 42.06 1.37750892456 19183 961 99.4401534394 0.226350871249 0.224039294544 0.2257 0.269553771557 0.2749 58.3221400192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.62705472716 f_angle_d 0.760719641553 f_chiral_restr 0.0485318648276 f_bond_d 0.00315135333631 f_plane_restr 0.00279147244875
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2756 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 93
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing