☰ Navigation Tabs
EGFP in neutral pH, Directionality of Optical Properties of Fluorescent Proteins
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 PEG 8000, HEPES, magnesium chloride
Crystal Properties Matthews coefficient Solvent content 1.9 35.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.94 α = 90 b = 62.12 β = 90 c = 68.86 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2019-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 39.39 86.5 0.077 0.084 0.999 15.35 5.924 24211 26.221
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.67 31.6 1.623 2.078 0.285 0.55 1.739
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.65 39.39 22868 1204 89.29 0.1801 0.1782 0.1912 0.2165 0.2225 RANDOM 24.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.169 r_dihedral_angle_3_deg 13.285 r_dihedral_angle_4_deg 11.351 r_dihedral_angle_1_deg 6.962 r_angle_refined_deg 1.803 r_angle_other_deg 0.98 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.169 r_dihedral_angle_3_deg 13.285 r_dihedral_angle_4_deg 11.351 r_dihedral_angle_1_deg 6.962 r_angle_refined_deg 1.803 r_angle_other_deg 0.98 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1807 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 474
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction REFMAC phasing