6YLH | pdb_00006ylh

Rix1-Rea1 pre-60S particle - full composite structure

ELECTRON MICROSCOPY

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6HYP
experimental model	PDB	6HYD
experimental model	PDB	6OR5
experimental model	PDB	6QTA
experimental model	PDB	3JCT
experimental model	PDB	6N8J

Sample
Rix1-Rea1 pre-60S assembly particle - composite structure of the entire particle

Specimen Preparation
Sample Aggregation State	PARTICLE
Vitrification Instrument	FEI VITROBOT MARK IV
Cryogen Name	ETHANE
Sample Vitrification Details

3D Reconstruction
Reconstruction Method	SINGLE PARTICLE
Number of Particles	114398
Reported Resolution (Å)	3.1
Resolution Method	FSC 0.143 CUT-OFF
Other Details	Resolution of the consensus refined map: 3.1A. Resolutions of the individual rigid bodies after Rigid Body Refinement: 3.0A (60S core); 3.3A (Rix1-subcomplex); 4.2A (Rea1 ring and tail)
Refinement Type
Symmetry Type	POINT
Point Symmetry	C1

Map-Model Fitting and Refinement
Id	1 (6HYP, 6HYD, 6OR5, 6QTA, 3JCT, 6N8J)
Refinement Space
Refinement Protocol	RIGID BODY FIT
Refinement Target
Overall B Value
Fitting Procedure
Details

Data Acquisition
Detector Type	GATAN K2 QUANTUM (4k x 4k)
Electron Dose (electrons/Å**2)	75

Imaging Experiment	1
Date of Experiment
Temperature (Kelvin)
Microscope Model	FEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging Mode	BRIGHT FIELD
Specimen Holder Model	FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
Source	FIELD EMISSION GUN
Acceleration Voltage (kV)	300
Imaging Details

EM Software
Task	Software Package	Version
PARTICLE SELECTION	RELION	3.0.8
IMAGE ACQUISITION	EPU
CTF CORRECTION	Gctf	1.06
MODEL FITTING	UCSF Chimera
INITIAL EULER ASSIGNMENT	RELION	3.0.8
FINAL EULER ASSIGNMENT	RELION	3.0.8
CLASSIFICATION	RELION	3.0.8
RECONSTRUCTION	RELION	3.0.8
MODEL REFINEMENT	PHENIX

Image Processing
CTF Correction Type	CTF Correction Details	Number of Particles Selected	Particle Selection Details
NONE		273799