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The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 2 2D 1H-13C HSQC 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 3 3D HNCO 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 4 3D HNCACB 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 5 3D CBCA(CO)NH 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 6 3D 1H-15N NOESY 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 7 3D 1H-13C NOESY 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850 8 3D HCCH-TOCSY 1 mM [U-13C; U-15N] N-NTD, 25 mM sodium phosphate, 50 mM sodium chloride 95% H2O/5% D2O 125 mM 6.5 1 atm 298 Bruker AVANCE 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 850
NMR Refinement Method Details Software torsion angle dynamics CYANA molecular dynamics YASARA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 40 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis TopSpin Bruker Biospin 2 data analysis Sparky Goddard 3 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 4 structure calculation YASARA YASARA