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FKBP12 in complex with the BMP potentiator compound 6 at 1.03A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DH0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 1.9 M AmSO4, 0.15 M CdCl2
Crystal Properties Matthews coefficient Solvent content 1.88 34.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.482 α = 90 b = 57.482 β = 90 c = 54.469 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2016-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99996 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 19.77 97.6 0.044 0.046 32.8 10.7 44575 10.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.03 1.06 78.4 0.14 0.166 6.3 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DH0 1.03 19.77 42347 2229 97.6 0.1413 0.1409 0.1398 0.1488 0.1461 RANDOM 10.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.19 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.92 r_dihedral_angle_3_deg 10.387 r_dihedral_angle_4_deg 9.28 r_dihedral_angle_1_deg 7.077 r_sphericity_free 3.51 r_sphericity_bonded 3.178 r_angle_refined_deg 1.369 r_rigid_bond_restr 0.864 r_chiral_restr 0.084 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.92 r_dihedral_angle_3_deg 10.387 r_dihedral_angle_4_deg 9.28 r_dihedral_angle_1_deg 7.077 r_sphericity_free 3.51 r_sphericity_bonded 3.178 r_angle_refined_deg 1.369 r_rigid_bond_restr 0.864 r_chiral_restr 0.084 r_bond_refined_d 0.007 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 839 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 62
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction