☰ Navigation Tabs
Xenorhabdus nematophila XptA1 in complex with porcine mucosa heparin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RW8
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.342 f_angle_d 0.768 f_chiral_restr 0.048 f_bond_d 0.006 f_plane_restr 0.006
Sample Xenorhabdus nematophila XptA1 pentamer in complex with porcine mucosa heparin
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 172596 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C5
Map-Model Fitting and Refinement Id 1 (6RW8) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value 65.8 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 52
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION SPHIRE IMAGE ACQUISITION EPU CTF CORRECTION SPHIRE INITIAL EULER ASSIGNMENT SPHIRE FINAL EULER ASSIGNMENT SPHIRE RECONSTRUCTION SPHIRE MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 346048