6YEP
LNA modified G-quadruplex with flipped G-tract and central tetrad
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 1D 1H | 0.4 mM L15 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 2 | 2D 1H-1H NOESY | 0.4 mM L15 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 3 | 2D 1H-1H NOESY | 0.4 mM L15 | 100% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 4 | 2D DQF-COSY | 0.4 mM L15 | 100% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| 5 | 2D 1H-13C HSQC | 0.4 mM L15 | 90% H2O/10% D2O | 15 mM | 7 | 1 atm | 298 | Bruker AVANCE NEO 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE NEO | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | X-PLOR NIH | |
| simulated annealing | Amber | |
| molecular dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 14 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | TopSpin | 4.0.4 | Bruker Biospin |
| 2 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
| 3 | structure calculation | X-PLOR NIH | 2.49 | Schwieters, Kuszewski, Tjandra and Clore |
| 4 | structure calculation | Amber | 16 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
| 5 | refinement | Amber | 16 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
