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Structure of ribosomal binding factor A RbfA of Staphylococcus aureus bacterium by NMR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNHA 0.9 mM [U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 2 3D HNHB 0.9 mM [U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 3 3D 1H-15N TOCSY 0.9 mM [U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 4 3D HNCA 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 5 3D HNCACB 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 12 3D CBCA(CO)NH 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 11 3D HNCO 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 10 3D C(CO)NH 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 9 3D HN(CO)CA 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 8 2D 1H-13C HSQC 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 7 2D 1H-15N HSQC 0.9 mM [U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 6 3D 1H-15N NOESY 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 13 2D 1H-1H NOESY 0.9 mM [U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700 14 3D 1H-13C NOESY aliphatic 1.7 mM [U-99% 13C; U-99% 15N] ribosome Binding Factor A 95% H2O/5% D2O 0 7.4 1 atm 308 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700
NMR Refinement Method Details Software molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CNS Brunger A. T. et.al. 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 data analysis TALOS Cornilescu, Delaglio and Bax 4 processing TopSpin 3.5 Bruker Biospin