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Ecoli GyrB24 with inhibitor 16a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6F86
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 0.1 M MIB pH 4.0; 25 % (w/v) PEG 1500
Crystal Properties Matthews coefficient Solvent content 1.97 37.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.18 α = 90 b = 67.143 β = 90 c = 68.971 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 41.18 98.9 0.19 0.202 0.993 7.2 12.7 25674 16.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 86 1.16 1.234 0.778 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6F86 1.6 35.38 24258 1346 98.81 0.1836 0.1819 0.1911 0.2143 0.2251 RANDOM 20.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.26 -1.75 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.282 r_dihedral_angle_4_deg 18.433 r_dihedral_angle_3_deg 12.459 r_dihedral_angle_1_deg 5.903 r_angle_refined_deg 1.59 r_angle_other_deg 1.468 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.282 r_dihedral_angle_4_deg 18.433 r_dihedral_angle_3_deg 12.459 r_dihedral_angle_1_deg 5.903 r_angle_refined_deg 1.59 r_angle_other_deg 1.468 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1538 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 34
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction Aimless data scaling PHASER phasing