6YCV

2'-F-riboguanosine and LNA modified hybrid type G-quadruplex with V-loop


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
11D 1H0.4 mM F14L1590% H2O/10% D2O15 mM71 atm308Bruker AVANCE NEO 600
22D 1H-1H NOESY0.4 mM F14L1590% H2O/10% D2O15 mM71 atm308Bruker AVANCE NEO 600
32D 1H-1H NOESY0.4 mM F14L15100% D2O15 mM71 atm313Bruker AVANCE NEO 600
42D 1H-13C HSQC0.4 mM F14L1590% H2O/10% D2O15 mM71 atm308Bruker AVANCE NEO 600
52D DQF-COSY0.4 mM F14L15100% D2O15 mM71 atm313Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpin4.0.4Bruker Biospin
2chemical shift assignmentCcpNmr Analysis2.4.2CCPN
3structure calculationX-PLOR NIH2.49Schwieters, Kuszewski, Tjandra and Clore
4structure calculationAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
5refinementAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman