☰ Navigation Tabs
2'-F-riboguanosine and LNA modified hybrid type G-quadruplex with V-loop
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 1D 1H 0.4 mM F14L15 90% H2O/10% D2O 15 mM 7 1 atm 308 Bruker AVANCE NEO 600 2 2D 1H-1H NOESY 0.4 mM F14L15 90% H2O/10% D2O 15 mM 7 1 atm 308 Bruker AVANCE NEO 600 3 2D 1H-1H NOESY 0.4 mM F14L15 100% D2O 15 mM 7 1 atm 313 Bruker AVANCE NEO 600 4 2D 1H-13C HSQC 0.4 mM F14L15 90% H2O/10% D2O 15 mM 7 1 atm 308 Bruker AVANCE NEO 600 5 2D DQF-COSY 0.4 mM F14L15 100% D2O 15 mM 7 1 atm 313 Bruker AVANCE NEO 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin 4.0.4 Bruker Biospin 2 chemical shift assignment CcpNmr Analysis 2.4.2 CCPN 3 structure calculation X-PLOR NIH 2.49 Schwieters, Kuszewski, Tjandra and Clore 4 structure calculation Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 5 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman