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Split gene transketolase, inactive beta4 tetramer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QGD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 291 ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.96 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.878 α = 90 b = 101.878 β = 90 c = 164.546 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 86.62 99.8 0.053 0.999 13.1 5.2 131289
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 4.245 0.339
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1qgd 1.9 64.008 131176 6613 99.757 0.179 0.1776 0.1775 0.2077 0.2077 59.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.167 2.167 -4.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.746 r_dihedral_angle_4_deg 22.247 r_dihedral_angle_3_deg 17.756 r_lrange_it 12.015 r_scangle_it 9.853 r_scbond_it 7.1 r_mcangle_it 6.524 r_dihedral_angle_1_deg 5.125 r_mcbond_it 4.701 r_angle_refined_deg 1.605
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.746 r_dihedral_angle_4_deg 22.247 r_dihedral_angle_3_deg 17.756 r_lrange_it 12.015 r_scangle_it 9.853 r_scbond_it 7.1 r_mcangle_it 6.524 r_dihedral_angle_1_deg 5.125 r_mcbond_it 4.701 r_angle_refined_deg 1.605 r_nbtor_refined 0.311 r_symmetry_nbd_refined 0.259 r_nbd_refined 0.206 r_symmetry_xyhbond_nbd_refined 0.143 r_xyhbond_nbd_refined 0.109 r_chiral_restr 0.105 r_ncsr_local_group_3 0.105 r_ncsr_local_group_6 0.097 r_ncsr_local_group_5 0.092 r_ncsr_local_group_4 0.09 r_ncsr_local_group_2 0.088 r_ncsr_local_group_1 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9005 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MoRDa phasing