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Crystal structure of the M295I variant of Ssl1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4M3H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 50 mM HEPES, pH 7.0, 1.4 M ammonium sulfate, 10 mM [Co(NH3)6]Cl3
Crystal Properties Matthews coefficient Solvent content 2.45 49.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.38 α = 90 b = 104.32 β = 90 c = 162.33 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.785 50 99.8 0.996 7.64 1.9 159870
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.785 1.89 99 0.521
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 4M3H 1.785 48.079 83649 4262 99.779 0.188 0.1856 0.1892 0.2276 0.2314 27.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.409 -0.495 2.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.928 r_dihedral_angle_4_deg 15.487 r_dihedral_angle_3_deg 13.934 r_dihedral_angle_1_deg 7.804 r_lrange_it 6.177 r_lrange_other 6.09 r_scangle_it 3.79 r_scangle_other 3.789 r_mcangle_it 3.093 r_mcangle_other 3.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.928 r_dihedral_angle_4_deg 15.487 r_dihedral_angle_3_deg 13.934 r_dihedral_angle_1_deg 7.804 r_lrange_it 6.177 r_lrange_other 6.09 r_scangle_it 3.79 r_scangle_other 3.789 r_mcangle_it 3.093 r_mcangle_other 3.093 r_scbond_it 2.531 r_scbond_other 2.531 r_mcbond_it 2.125 r_mcbond_other 2.123 r_angle_refined_deg 1.559 r_angle_other_deg 1.365 r_nbd_refined 0.198 r_symmetry_nbd_refined 0.195 r_symmetry_nbd_other 0.193 r_nbd_other 0.192 r_symmetry_xyhbond_nbd_other 0.191 r_symmetry_xyhbond_nbd_refined 0.174 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.156 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.07 r_metal_ion_refined 0.051 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6253 Nucleic Acid Atoms Solvent Atoms 641 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing