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Crystal Structure of the H33A variant of RsrR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6HSD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 293 NaCl, MPD, MES, dithionite, anaerobic
Crystal Properties Matthews coefficient Solvent content 2.27 45.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.92 α = 90 b = 117 β = 95.83 c = 71.33 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2019-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.980110 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 45.14 96.5 0.053 0.062 0.999 12.02 3.9 68787
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.78 1.43 1.66 0.433 0.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6hsd 1.68 45.14 65117 3421 97.49 0.1613 0.1589 0.1658 0.2051 0.2125 RANDOM 37.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.57 0.67 0.29 -1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.811 r_dihedral_angle_4_deg 15.954 r_dihedral_angle_3_deg 13.344 r_dihedral_angle_1_deg 4.669 r_rigid_bond_restr 2.47 r_angle_other_deg 1.533 r_angle_refined_deg 1.32 r_chiral_restr 0.066 r_gen_planes_other 0.016 r_bond_other_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.811 r_dihedral_angle_4_deg 15.954 r_dihedral_angle_3_deg 13.344 r_dihedral_angle_1_deg 4.669 r_rigid_bond_restr 2.47 r_angle_other_deg 1.533 r_angle_refined_deg 1.32 r_chiral_restr 0.066 r_gen_planes_other 0.016 r_bond_other_d 0.012 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4562 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 91
Software Software Software Name Purpose XDS data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing