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Bicyclic peptide bp65 crystallized as racemic mixture at 0.9 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 35% v/v tert-Butanol
Crystal Properties Matthews coefficient Solvent content 2.88 45.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 16.482 α = 111.28 b = 26.209 β = 92.26 c = 29.909 γ = 101.96
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2017-12-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.8 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.9 27.7 87.71 0.165 0.233 0.165 0.925 0.233 4.5 1.76 29455
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.9 0.92 84.73 0.247 0.349 0.247 0.886 2.2 1.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE NONE 0.9 27.7 29455 87.7 0.1913 0.1264 0.2764 0.2929 RANDOM 3.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_zero_chiral_vol 94 s_non_zero_chiral_vol 1 s_angle_d 0.822 s_anti_bump_dis_restr 0.128 s_similar_adp_cmpnt 0.022 s_bond_d 0.006 s_from_restr_planes 0.005 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 194 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 36
Software Software Software Name Purpose XDS data reduction XSCALE data scaling SHELX phasing SHELX refinement PDB_EXTRACT data extraction