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Designing a Granulopoietic Protein by Topological Rescaffolding 1: Sohair
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCO 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 600 2 3D HNCA 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 600 3 3D (H)CC(CO)NH 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 600 4 3D H(CCO)NH 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 600 5 3D CCH-TOCSY 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 600 6 2D NOESY 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 800 7 3D CNH-NOESY 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 800 8 3D 1H-15N NOESY 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 800 9 3D NNH-NOESY 650 uM [U-99% 13C; U-99% 15N] sohair, 50 mM PBS 90% H2O/10% D2O 125 mM 5.2 1 atm 315 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800
NMR Refinement Method Details Software NOESY back-calculation see (2019) ElGamacy et al., Structure 27: 853-865.e5 CoMAND
NMR Ensemble Information Conformer Selection Criteria back calculated data agree with experimental NOESY spectrum Conformers Calculated Total Number 20000 Conformers Submitted Total Number 19 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis TopSpin Bruker Biospin 2 chemical shift assignment Sparky Goddard 3 structure calculation Rosetta Baker 4 refinement CoMAND in house