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Constitutive decay element CDE2 from human 3'UTR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 900 uM CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 950 2 2D 1H-13C HSQC 900 uM CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 800 3 2D gamma HCN 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 900 4 3D HCN 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 5 fwHCCH-TOCSY-CCH-E.COSY 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 6 3D HCP 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 7 2D qHCP 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 8 HCCH-TOCSY 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 600 9 2D PFIDS 1300 uM [U-99% 13C; U-99% 15N] CDE2 100% D2O 25 mM potassium phosphate, 50 mM KCl 6.2 1 bar 298 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800 3 Bruker AVANCE III 900 4 Bruker AVANCE III 950 5 Bruker AVANCE III 700
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CNS 1.2 Brunger A. T. et.al. 2 peak picking Sparky 3.2 Goddard 3 chemical shift assignment Sparky 3.2 Goddard