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Structure of SUMO1-ML786519 adduct bound to SAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y8R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 50 mM BisTris, pH 6.5, 50 mM Ammonium Sulfate, 30% pentaerythritol ethoxylate (Hampton Index 57)
Crystal Properties Matthews coefficient Solvent content 2.19 43.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.9 α = 90 b = 72.422 β = 93.858 c = 126.87 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2013-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 47.702 98.47 0.093 25.7 3.7 71980
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.05 97.15 0.818 2.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1Y8R 1.98 47.702 71980 3655 98.465 0.208 0.2064 0.24 0.2384 45.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.075 0.632 0.67 -0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.337 r_dihedral_angle_4_deg 17.736 r_dihedral_angle_3_deg 15.53 r_lrange_it 9.892 r_scangle_it 7.458 r_dihedral_angle_1_deg 6.462 r_mcangle_it 5.903 r_scbond_it 5.274 r_mcbond_it 4.252 r_angle_refined_deg 1.617
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.337 r_dihedral_angle_4_deg 17.736 r_dihedral_angle_3_deg 15.53 r_lrange_it 9.892 r_scangle_it 7.458 r_dihedral_angle_1_deg 6.462 r_mcangle_it 5.903 r_scbond_it 5.274 r_mcbond_it 4.252 r_angle_refined_deg 1.617 r_nbtor_refined 0.317 r_nbd_refined 0.228 r_symmetry_xyhbond_nbd_refined 0.174 r_xyhbond_nbd_refined 0.159 r_symmetry_nbd_refined 0.159 r_chiral_restr 0.142 r_bond_refined_d 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6634 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing