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Crystal Structure of Mouse STING CTD complex with SR-717.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LOJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 297 PEG3350, calcium chloride
Crystal Properties Matthews coefficient Solvent content 2.17 43.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.68 α = 90 b = 65.68 β = 90 c = 172.577 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.979 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 46.49 99.6 0.077 0.082 0.028 0.999 20.2 8.4 13976
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.59 97.3 0.679 0.722 0.239 0.869 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LOJ 2.49 46.44 13267 674 99.39 0.2247 0.2221 0.2253 0.2705 0.2673 RANDOM 54.169
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 2.03 -4.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.898 r_dihedral_angle_4_deg 21.671 r_dihedral_angle_3_deg 18.951 r_dihedral_angle_1_deg 7.735 r_angle_refined_deg 1.47 r_angle_other_deg 1.177 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.898 r_dihedral_angle_4_deg 21.671 r_dihedral_angle_3_deg 18.951 r_dihedral_angle_1_deg 7.735 r_angle_refined_deg 1.47 r_angle_other_deg 1.177 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2903 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction