6XE6

Structure of Human Dispatched-1 (DISP1)


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.708
r_dihedral_angle_3_deg16.213
r_dihedral_angle_4_deg10.071
r_long_range_B_refined8.923
r_long_range_B_other8.922
r_dihedral_angle_1_deg6.486
r_mcangle_it3.956
r_mcangle_other3.956
r_scangle_other2.652
r_mcbond_it2.133
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.708
r_dihedral_angle_3_deg16.213
r_dihedral_angle_4_deg10.071
r_long_range_B_refined8.923
r_long_range_B_other8.922
r_dihedral_angle_1_deg6.486
r_mcangle_it3.956
r_mcangle_other3.956
r_scangle_other2.652
r_mcbond_it2.133
r_mcbond_other2.133
r_scbond_it1.3
r_scbond_other1.3
r_angle_refined_deg1.292
r_angle_other_deg1.058
r_chiral_restr0.069
r_bond_refined_d0.01
r_bond_other_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Human dispatched-1 in complex with dual-lipidated SHH-N
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles400432
Reported Resolution (Å)4.53
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)62
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeDARK FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
CLASSIFICATIONRELION
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING ONLY