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Structure of Trichoplusia ni poxin in post-reactive state with Gp[2'-5']Ap[3']
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6XB6 Phased with Companion Structure 6XB6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 100 mM HEPES-KOH, 32% Jeffamine ED-2001
Crystal Properties Matthews coefficient Solvent content 4.85 74.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.422 α = 90 b = 124.422 β = 90 c = 132.178 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2019-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.99995 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 39.57 99.6 0.068 0.996 9.5 15.2 22422 76.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.89 3.07 97.9 0.854 0.372 1.1 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE Phased with Companion Structure 6XB6 2.9 39.57 1.34 22135 2006 99.3 0.1869 0.1841 0.1845 0.2146 0.2124 75.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.5016 f_angle_d 0.9345 f_chiral_restr 0.053 f_plane_restr 0.0064 f_bond_d 0.0062
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3726 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 92
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHASER phasing