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Structure of the acetate-bound form of ArrX from Chrysiogenes arsenatis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6X6B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M ammonium acetate, 0.1 M Tris pH 7.5, 20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.663 α = 90 b = 52.927 β = 108.361 c = 54.967 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 40.67 96.7 0.992 4.4 2.8 23640
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.82 0.374
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6X6B 1.781 40.67 22438 1164 96.382 0.191 0.189 0.2216 0.2367 28.407
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.255 1.149 -1.654 -0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.513 r_dihedral_angle_4_deg 13.549 r_dihedral_angle_3_deg 12.94 r_dihedral_angle_1_deg 6.076 r_lrange_it 5.897 r_lrange_other 5.896 r_scangle_it 3.588 r_scangle_other 3.586 r_mcangle_it 2.307 r_mcangle_other 2.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.513 r_dihedral_angle_4_deg 13.549 r_dihedral_angle_3_deg 12.94 r_dihedral_angle_1_deg 6.076 r_lrange_it 5.897 r_lrange_other 5.896 r_scangle_it 3.588 r_scangle_other 3.586 r_mcangle_it 2.307 r_mcangle_other 2.307 r_scbond_it 2.25 r_scbond_other 2.249 r_mcbond_it 1.534 r_mcbond_other 1.522 r_angle_refined_deg 1.316 r_angle_other_deg 1.237 r_nbd_refined 0.194 r_symmetry_nbd_refined 0.18 r_symmetry_xyhbond_nbd_refined 0.179 r_symmetry_nbd_other 0.176 r_xyhbond_nbd_refined 0.164 r_nbtor_refined 0.161 r_nbd_other 0.151 r_symmetry_xyhbond_nbd_other 0.094 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.06 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2019 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing