☰ Navigation Tabs
Interleukin-10 signaling complex with IL-10RA and IL-10RB
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y6K experimental model PDB 3LQM
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.6174 f_angle_d 1.1287 f_chiral_restr 0.0576 f_bond_d 0.0074 f_plane_restr 0.0069
Sample Interleukin-10 signaling complex with IL-10RA and IL-10RB Sample Components Interleukin-10, IL-10RA IL-10RB
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details 5s blotting
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 86725 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (1Y6K, 3LQM) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) -800 Maximum Defocus (nm) -2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION SerialEM CTF CORRECTION cryoSPARC MODEL FITTING PHENIX INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 6701298