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Structure of the sulfate-bound form of ArrX from Chrysiogenes arsenatis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ESK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289.15 0.2 M lithium sulfate, 0.1 M Tris pH 8.5, 25% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.84 33.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.8 α = 90 b = 53.2 β = 90 c = 89.84 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 45.7 99.4 0.997 10.1 12.9 29902
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 0.524
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6ESK 1.67 45.7 28407 1447 99.275 0.176 0.1747 0.1823 0.2043 0.2129 30.458
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.126 0.817 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.402 r_dihedral_angle_3_deg 13.647 r_dihedral_angle_4_deg 13.272 r_dihedral_angle_1_deg 5.938 r_lrange_it 5.156 r_lrange_other 5.155 r_scangle_it 3.915 r_scangle_other 3.914 r_scbond_it 2.603 r_scbond_other 2.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.402 r_dihedral_angle_3_deg 13.647 r_dihedral_angle_4_deg 13.272 r_dihedral_angle_1_deg 5.938 r_lrange_it 5.156 r_lrange_other 5.155 r_scangle_it 3.915 r_scangle_other 3.914 r_scbond_it 2.603 r_scbond_other 2.601 r_mcangle_it 2.282 r_mcangle_other 2.281 r_mcbond_it 1.582 r_mcbond_other 1.582 r_angle_refined_deg 1.366 r_angle_other_deg 1.312 r_symmetry_xyhbond_nbd_refined 0.448 r_xyhbond_nbd_refined 0.202 r_nbd_refined 0.191 r_nbd_other 0.179 r_symmetry_nbd_refined 0.178 r_symmetry_nbd_other 0.17 r_nbtor_refined 0.166 r_symmetry_nbtor_other 0.079 r_xyhbond_nbd_other 0.074 r_chiral_restr 0.073 r_symmetry_xyhbond_nbd_other 0.072 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2020 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing