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Crystal structure of the LmFPPS mutant E97Y
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291.5 100 mM MES, 15-25 % PEG 8000, 100-200 mM CaAcetate
Crystal Properties Matthews coefficient Solvent content 2.27 45.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.699 α = 90 b = 86.078 β = 90 c = 107.425 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2010-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 67.17 90.6 0.077 11.8 4.7 43443
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 78.7 0.241 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4JZX 2.05 50 40295 2161 89.07 0.2168 0.2126 0.2303 0.2948 0.3076 RANDOM 18.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.94 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.182 r_dihedral_angle_3_deg 16.423 r_dihedral_angle_4_deg 12.422 r_dihedral_angle_1_deg 5.421 r_angle_refined_deg 1.812 r_angle_other_deg 1.042 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5754 Nucleic Acid Atoms Solvent Atoms 595 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction DENZO data reduction REFMAC phasing