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HUMAN IDO1 IN COMPLEX WITH COMPOUND 4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other previously solved structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 mM Tris pH 8.0, 20% (w/v) PEG6000, 0.2 M NaCl
Crystal Properties Matthews coefficient Solvent content 3 59.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.463 α = 90 b = 93.499 β = 90 c = 131.358 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 76.17 97.4 0.033 0.04 0.999 20.2 2.9 39371
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.68 98.2 0.327 0.403 0.87 3.38 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT previously solved structure 2.43 76.17 38760 971 97.42 0.1988 0.1979 0.2011 0.235 0.2374 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.05 1.05 2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.503 r_dihedral_angle_3_deg 12.538 r_dihedral_angle_4_deg 9.453 r_dihedral_angle_1_deg 4.728 r_angle_refined_deg 1.105 r_angle_other_deg 0.899 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_bond_other_d 0.004 r_gen_planes_refined 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.503 r_dihedral_angle_3_deg 12.538 r_dihedral_angle_4_deg 9.453 r_dihedral_angle_1_deg 4.728 r_angle_refined_deg 1.105 r_angle_other_deg 0.899 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5960 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing